Welcome to DeepTransyt's documentation!
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   :alt: Downloads per month

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   :alt: License

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   :alt: Wheel Support

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   :alt: Python Versions
   
.. toctree::
   :maxdepth: 2
   :caption: Contents:

   installation
   usage
   api

Features
--------
DeepTransyt provides a range of features to predict substrates and metabolic pathways.

Notes
-----
You can start using DeepTransyt quickly by following the setup and usage instructions.

.. note::

   Remember to install dependencies via:

   ``pip install deeptransyt``

Installation
------------
To install DeepTransyt, you can use:

.. code-block:: bash

   pip install deeptransyt

Usage
-----
To use DeepTransyt, run the following command:

.. code-block:: bash

   deeptransyt --input your_input_file --output your_output_file

API
---
For detailed API usage, refer to the API documentation here.
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